pyNetConv ChangeLog
v0.12
- added support for isolated (not connected) nodes in SIF format. Now SIF, NET and GML formats support direction, and isolated nodes.
- added
NX2netconv() method (complementary to netconv2NX()).
- filter option in
importSIF(). Now it is possible to import only selected interaction types.
v0.11.2
- pajek stores information of direction as a number (1/0) instead of boolena value (True/False). This way is better to export to GML.
v0.11
- gui.py renamed to netconv-gui.py and is now installed as a script.
- pajek filter supports directed and undirected graphs.
v0.10.2
v0.10.1
- Added support to export all nodes in NX format. Now supports
conversion to NX of networks with isolated (unconnected) nodes.
- new function added:
netconv2NX()
- API back to the source download (I forgot it in 0.10)
v0.10
v0.9
- new
toList() and fromList() methods in class Network. With
this, it will be possible to use some other tools to graph
manipulation such as the great
NetworkX.
v0.8.1
- lots of bug fixes
- string attributes are now quoted in pajek and gml exports
- the group "Line" in GML files is now ignored. It shold be
fixed later.
- '&' is changed to '&' in GML export. More characteres
need to be added
- Id's from nodes are added in the import and stored in the
Node class
- info about nodes from/to are added. This way, one can have
information about number of edges conected to the node
- Empty columns are not imported in expression anymore
- substitution of spaces by "_" in the labels of the expression
filter
v0.8
- Affymetrix tab separated file importer (for expression data)
- fix in Pajek filter: now it reads Arcs and Edges
- Some modifications in the GUI
- instead of a Convert button, now there is a Import and a Export button
- attributes to be exported are now selected from a dialog
- GUI includes conversion of expression data
- from Affy TSV files
- to Cytoscape attributes
- to Cytoscape expression data
v0.7
v0.6
- Initial release
- Import/export from/to:
- Pajek network files (.net)
- Pajek cluster files (.clu)
- Cytoscape network files (.sif)
- Cytoscape node attributes files
- GML files